MRIQC: individual T1w report

Summary

  • BIDS filename: sub-3035_ses-1_T1w.
  • Date and time: 2022-10-31, 16:28.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6511617724307429
cnr2.0085732430276693
efc0.6476402846986338
fber1677.9167755820008
fwhmavg4.339636666666666
fwhmx4.26495
fwhmy4.87407
fwhmz3.87989
icvscsf0.192364284620765
icvsgm0.4169326167516528
icvswm0.39070309862758223
inumed1.6839381456375122
inurange0.8910729169845579
qi10.0
qi20.0047532518718220295
rpvecsf23.321519828864268
rpvegm11.469788443257892
rpvewm14.549682883332103
sizex176
sizey256
sizez256
snrcsf2.877444847894656
snrgm8.860047792124714
snrtotal10.549820524652498
snrwm19.911968933938123
snrdcsf35.37191728695461
snrdgm75.71634672713253
snrdtotal68.85030478536916
snrdwm95.46265034202034
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.598187221352071
summarybgmad6.862750920340311
summarybgmean15.686428236610936
summarybgmedian13.77502678334713
summarybgn2008764.0
summarybgp054.573085814714432
summarybgp9531.50967665016651
summarybgstdv8.353318442158113
summarycsfk33.228060688114944
summarycsfmad103.80944313840072
summarycsfmean398.35747069908524
summarycsfmedian370.53148967027664
summarycsfn24224.0
summarycsfp05252.03000926300885
summarycsfp95618.2979329511521
summarycsfstdv128.7683556603955
summarygmk-0.004688917919628999
summarygmmad88.88502698031125
summarygmmean803.4686056985769
summarygmmedian793.1515421569347
summarygmn26807.0
summarygmp05672.07630674541
summarygmp95963.9395665347572
summarygmstdv89.51833747269256
summarywmk0.684006463126209
summarywmmad45.80679529962087
summarywmmean1003.8547774502943
summarywmmedian1000.000021263957
summarywmn268265.0
summarywmp05927.7787269949913
summarywmp951092.5213550031185
summarywmstdv50.220958095665694
tpmoverlapcsf0.18540456891059875
tpmoverlapgm0.46300551295280457
tpmoverlapwm0.506373941898346
wm2max0.5276953616530997
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime09:02:50.852500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20211006
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[0.0397196, 0.999156, 0.0104705, 0.0157351, 0.00985206, -0.999828]
ImageOrientationTextSag>Cor(2.3)>Tra(-0.9)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps191
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.036515
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber8
ShimSetting[2622, 5487, -7498, -95, -27, -883, 172, -167]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp259.302
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum377417a28b79ade6181da8d268e194d3
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.